MinIONQC(2)

We need to run Rscript with MinIONQC.R:

MinIONQC.R

… and specify the following options:

What?	parameter	Our value
The input directory	-i	~/workdir/data_artic/basecall_tiny/
The output directory	-o	~/workdir/data_artic/MinIONQC/
The number of processors to be used	-p	14

The complete command is:

cd ~/workdir/data_artic/
MinIONQC.R -i basecall_tiny -o MinIONQC -p 14

This will create several analysis plots. After that, you can load the plots in your web browser by using a file browser. You could use:

firefox ~/workdir/data_artic/MinIONQC/basecall_tiny/*.png

to load all images at once in firefox.

Again, check out the corresponding home page to learn more about all generated results: https://github.com/roblanf/minion_qc