Assembly evaluation with quast¶
As usual, we are going to use quast for assembly evaluation:
quast.py -t 14 -o ~/workdir/assembly/assembly_wgs/quast_2/ -r ~/workdir/wuhan.fasta ~/workdir/assembly/assembly_wgs/assembly.contigs.fasta ~/workdir/assembly/assembly_wgs/racon.fasta ~/workdir/assembly/assembly_wgs/medaka/consensus.fasta
QUAST generates HTML reports including a number of interactive graphics. To access these reports, open a file browser:
firefox ~/workdir/assembly/assembly_wgs/quast_2/report.html