de.NBI Nanopore Training Course
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  • Connect to your virtual machine
  • The Tutorial Data Sets
  • Basecalling
  • Data Quality Assessment
  • Recap Day 1
  • Assembly
    • Assembly with canu
    • Assembly with canu(2)
    • Assembly with canu(3)
    • Assembly evaluation with QUAST
    • Assembly evaluation with QUAST(2)
    • Assembly Graph inspection with Bandage
    • Get and inspect the WGS dataset
    • Assembly of WGS dataset
    • Assembly with WGS dataset(2)
    • WGS Assembly evaluation with QUAST
    • WGS Assembly evaluation with QUAST(2)
    • WGS Assembly Graph inspection with Bandage
    • Quality control by mapping
    • Quality control by mapping(2)
  • Assembly polishing
  • Recap Day 2 / Preparations Day 3
  • ARTIC pipeline
  • Outlook
de.NBI Nanopore Training Course
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  • Assembly
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AssemblyΒΆ

We are going to create an assembly with canu and evaluate it with a mapping to the reference genome and with quast.

  • Assembly with canu
  • Assembly with canu(2)
  • Assembly with canu(3)
  • Assembly evaluation with QUAST
  • Assembly evaluation with QUAST(2)
  • Assembly Graph inspection with Bandage
  • Get and inspect the WGS dataset
  • Assembly of WGS dataset
  • Assembly with WGS dataset(2)
  • WGS Assembly evaluation with QUAST
  • WGS Assembly evaluation with QUAST(2)
  • WGS Assembly Graph inspection with Bandage
  • Quality control by mapping
  • Quality control by mapping(2)
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