Merge fastqsΒΆ

And again, we are merging all fastq files:

cat ~/workdir/basecall/*runid*.fastq.gz > ~/workdir/basecall/basecall.fastq.gz
cat ~/workdir/basecall_small/*runid*.fastq.gz > ~/workdir/basecall_small/basecall.fastq.gz

If you want, you can check again for the number of reads:

zcat ~/workdir/basecall_small/basecall.fastq.gz | wc | awk '{print $1/4}'
or
zcat ~/workdir/basecall/basecall.fastq.gz | wc | awk '{print $1/4}'